PathFinder API

An open-source tool-calling LLM agent for constructing VEuPathDB search strategies via natural language.

Chat & Agent

Unified agent that researches, plans, and builds strategy graphs in a single conversation.

Architecture Overview

Evaluation & Analysis

Backend evaluation engine powering the workbench: control sets, classification metrics, cross-validation, and enrichment.

Evaluation Engine

Workbench

Gene set management, confidence scoring, ensemble analysis, and AI-powered result exploration.

Gene Sets

VEuPathDB Integration

WDK client, catalog discovery, strategy API, and multi-site support across 15+ databases.

VEuPathDB Integrations

RAG & Vectorstore

Qdrant-powered semantic retrieval for catalog search and example strategy plans.

Vectorstore

LLM Engines

OpenAI, Anthropic, Google, Ollama, and a deterministic mock engine for E2E testing.

LLM Engines

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Documentation

Contents

• API Reference
  • Architecture Overview
  • Evaluation Engine
  • Agents
  • Sub-kani Orchestration
  • Delegation Plans
  • AI Functions Reference
  • AI & Agent
  • LLM Engines
  • AI Tools
  • Services
  • Gene Sets
  • VEuPathDB Integrations
  • WDK Services
  • Domain Logic
  • Strategy Services
  • Chat & Orchestration
  • Research Services
  • Persistence
  • Vectorstore
  • HTTP Transport
  • Platform